I think there were a lot of little things that bugged me. I thought the occupation was kind of not thought out well. I understand the League of Shadows wanted to destroy Gotham because it was corrupt, but if they had actually cleaned it up as much as they said they had, then it just seemed like they were wrong, which kind of undercuts the dramatic tension. And five months...that just seems like a really long time. Couldn't the military have tracked the trucks? The streets seemed pretty empty. They could have just gotten some Navy SEALS in there laser targeted it up and bombed it from high altitude.
And then at the end when the batwing shows up to take out one tank. Why not all three of them? Why not shoot a bunch of rubber bullets into the defending force to give the police a better chance of engaging with fewer injuries?
Where was this prison he was in? And to address Rob's earlier complaint about Batman's back injury... he's in a mystical prison where a 9 year old girl can jump farther than a grown man. I didn't really have a problem with the back stuff. I thought it was pretty funny really, "here, we just need to push this thing that's sticking out back into place!" This on top of all the damage the doctor detailed earlier which he fixes with a magical mechanical knee brace. Out of all the things in the movie, the back thing actually didn't bother me at all. :)
I really liked Anne Hathaway's Cat Woman. I think it was Rob who said she didn't have Michelle Pfeiffer's screen presence, but she did a great job and had some good lines.
I thought Gordon-Levitt's character was perhaps the oddest, as he didn't feel very worked into the story when interacting with Batman/Bruce Wayne. Was there a scene in the first movie where Batman saves him after his father died? I need to rewatch that.
Aside from the batwing, which I would have loved to see more of, I really liked the batcycle in this movie. The way it's tires rotated...I don't know how practical that would be in a real world application, but it looked really really cool. lol